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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21034693_21035311_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21034693 - 21035311
Intron Length:
619

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAGCAAGG
5'SS Class:
major
3'SS Sequence:
CTCCTCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCACAC
U12 Branch Point Sequence:
GCACACGGAGCA
Flanking Amino Acid:
CYSIWCHMQEFAVCCYSLAG
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
59.3
45.1
Major BPS
44
-0.3
1.2
46.4
38.9
Major PPT
76.7
0.6
0.9
72
32.5
Minor 5ss
26.7
-2.7
4
39.9
45.7
Minor BPS
35.3
-1.1
2.1
40.79
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027837
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032444
21031237 - 21040225
8989