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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21049173_21069782_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21049173 - 21069782
Intron Length:
20610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTTCCTCATCC
Flanking Amino Acid:
YGGLAAAQEPAPRGSGSWCS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74
0.54
0.8
65.5
35
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
55.8
0.16
1.9
66.27
45.4

Associated Gene:

Gene:
PLD1
Ensembl Gene ID:
ENSAPLG00000012211
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038990
21048938 - 21102712
53775