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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2107564_2113885_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2107564 - 2113885
Intron Length:
6322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGCATG
5'SS Class:
major
3'SS Sequence:
ATTATTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATTATTTTCACA
Flanking Amino Acid:
EKRAKLREIELKVMKFQDEL
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.3
72.7
44.5
Major BPS
80
0.75
1
78.6
31
Major PPT
81.9
0.72
0.8
76.4
37
Minor 5ss
38.4
-1.3
2.9
48.8
47
Minor BPS
55.8
0.17
1.7
69.65
36.8

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034347
2102816 - 2147051
44236
ENSAPLT00000002428
2102816 - 2147051
44236