Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21080987_21081303_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21080987 - 21081303

Intron Length:

317

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGACGT

5'SS Class:

major

3'SS Sequence:

CATGTTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATAAAT

U12 Branch Point Sequence:

ATGTTTTTACAG

Flanking Amino Acid:

AAVQENTLAKWYVNAKSYFE

Intron Amino Acid Position:

353

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

64.2

41.6

Major BPS

65.7

0.39

71.3

30.3

Major PPT

82.2

0.73

0.9

75.8

37.8

Minor 5ss

28.4

-2.5

3.1

36.3

41.7

Minor BPS

48.6

-0.2

1.7

53.91

41.6

Associated Gene:

Gene:

PLD1

Ensembl Gene ID:

ENSAPLG00000012211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038990

21048938 - 21102712

53775

ENSAPLT00000012775

21069783 - 21102712

32930