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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21088003_21088960_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21088003 - 21088960
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATAAAT
U12 Branch Point Sequence:
TTTGCCATAAAT
Flanking Amino Acid:
DSVSSIDSESSYCNPPRSQP
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
62.2
0.3
1.1
68.9
33
Major PPT
79
0.65
0.9
73.4
36.8
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
65.2
0.56
1.8
86.5
38.9

Associated Gene:

Gene:
PLD1
Ensembl Gene ID:
ENSAPLG00000012211
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038990
21048938 - 21102712
53775