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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21088003_21090456_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21088003 - 21090456
Intron Length:
2454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAG
U12 Branch Point Sequence:
TTTTGTTTGCCC
Flanking Amino Acid:
DSVSSIDSESNKGSIRSLKT
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
29.9
Major BPS
49
-0
1.8
57.1
49.4
Major PPT
65.8
0.36
1.1
61.5
40
Minor 5ss
37
-1.5
3.3
50.9
39.6
Minor BPS
43.5
-0.5
3.6
73.02
38.9

Associated Gene:

Gene:
PLD1
Ensembl Gene ID:
ENSAPLG00000012211
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012775
21069783 - 21102712
32930