Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21091216_21094992_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21091216 - 21094992

Intron Length:

3777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTACT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

TGGGGCTGAGGC

Flanking Amino Acid:

VPEAFHATVQVIRSAADWSA

Intron Amino Acid Position:

708

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

80.5

33.9

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

0.81

0.8

80.4

31.6

Minor 5ss

31.5

-2.1

42.7

44.3

Minor BPS

-1

2.1

43.46

Associated Gene:

Gene:

PLD1

Ensembl Gene ID:

ENSAPLG00000012211

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038990

21048938 - 21102712

53775

ENSAPLT00000012775

21069783 - 21102712

32930