About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21099250_21101169_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21099250 - 21101169
Intron Length:
1920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCCCCACCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAC
U12 Branch Point Sequence:
TGTTCCCCACCC
Flanking Amino Acid:
LIADDNTVIIGSANINDRSM
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
49.9
-0
1.3
60.3
37.5
Major PPT
67.8
0.4
0.8
58.1
32
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
48.8
-0.1
2.1
68.63
42.5

Associated Gene:

Gene:
PLD1
Ensembl Gene ID:
ENSAPLG00000012211
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038990
21048938 - 21102712
53775
ENSAPLT00000012775
21069783 - 21102712
32930