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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2114049_2115171_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2114049 - 2115171
Intron Length:
1123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
HEESEEEEIQNPEEESEDEE
Intron Amino Acid Position:
752

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
87
27.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
77.4
0.62
1
75.7
38.5
Minor 5ss
42.7
-0.8
3
60.1
38.5
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034347
2102816 - 2147051
44236
ENSAPLT00000002428
2102816 - 2147051
44236