About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21141286_21187368_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21141286 - 21187368
Intron Length:
46083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
ACTTTTCTATTT
Flanking Amino Acid:
GNGTYGQVYKGRHVKTGQLA
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.7
37.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
34.3
-1.8
3.4
47
48.3
Minor BPS
47.5
-0.1
1.8
65.82
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026428
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032290
21120172 - 21201153
80982