About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21197261_21199465_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21197261 - 21199465
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
CTGAATTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAATT
Flanking Amino Acid:
IAYICREILRGLSHLHQHKV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
72.3
37.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.7
0.4
0.9
58.6
42.6
Minor 5ss
42.9
-0.8
3.1
52.3
45
Minor BPS
78.4
0.97
1.2
92.49
29.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026428
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032290
21120172 - 21201153
80982