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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21199557_21200926_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21199557 - 21200926
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGATCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATCC
Flanking Amino Acid:
LLTENAEVKLVDFGVSAQLD
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.5
0.57
0.9
69.7
35.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
58.6
0.25
1.7
70.59
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026428
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032290
21120172 - 21201153
80982