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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21229799_21231880_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21229799 - 21231880
Intron Length:
2082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
CCCTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
TGATGGTGAATG
Flanking Amino Acid:
LRQEEDIPPKVPQRTTSISP
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
81.1
0.7
0.7
72.4
32.3
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
41.9
-0.7
2.4
49.74
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462