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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21241718_21244802_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21241718 - 21244802
Intron Length:
3085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAGC
5'SS Class:
major
3'SS Sequence:
ATTCTGTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTGTCACTAACG
Flanking Amino Acid:
TVPVSDIPRLIPTGIPGSNE
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
71.9
38
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.5
0.6
0.9
73.6
36.3
Minor 5ss
36.3
-1.6
3
48.6
40.5
Minor BPS
50.4
-0.1
2.1
61.29
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462