About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2124274_2127551_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2124274 - 2127551
Intron Length:
3278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
GTTATTGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
AIVKVVIPTERNLLALIHRM
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
75.1
0.56
1
69.6
41.4
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034347
2102816 - 2147051
44236
ENSAPLT00000002428
2102816 - 2147051
44236