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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21244930_21247365_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21244930 - 21247365
Intron Length:
2436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTCCTCATGC
Flanking Amino Acid:
SREGTLMVRETSGEKKRSGH
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
80.1
0.68
0.9
73.8
36.9
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
49.7
-0
2.1
66.27
45.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462