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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21247531_21250595_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21247531 - 21250595
Intron Length:
3065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAG
U12 Branch Point Sequence:
GTGCTCTGAGCT
Flanking Amino Acid:
HAQDMDSVPEYGMGSSTKAS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
69.9
41.1
Major BPS
55.1
0.13
1.5
54.7
43.1
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
34.7
-1.7
3.6
48.4
42.3
Minor BPS
49.2
0.02
1.7
67.09
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462