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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21254898_21256030_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21254898 - 21256030
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
ATTTTAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTATTTTAACT
Flanking Amino Acid:
NSYDIYIPSHIQGNITPHAI
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.7
0.64
0.9
72.1
37.4
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
80.2
1.03
1.1
92.12
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462