About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21256933_21258896_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21256933 - 21258896
Intron Length:
1964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CAGCATTTAACA
Flanking Amino Acid:
LKFLCERNDKVFFASVRSGG
Intron Amino Acid Position:
692

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
75.4
0.57
0.9
66.7
39.7
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
53.8
0.12
1.5
58.83
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010480
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011003
21227519 - 21258980
31462