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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21264828_21264869_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21264828 - 21264869
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTGGCCAC
5'SS Class:
major
3'SS Sequence:
GCCCCGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACCAAC
U12 Branch Point Sequence:
TGGCCACCAACG
Flanking Amino Acid:
ARVLGIIPMDSTVPSTVPGT
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
56.4
45.2
Major BPS
46.8
-0.2
1.1
52
30.4
Major PPT
63.3
0.3
0.9
52.9
36.7
Minor 5ss
22.8
-3.1
3.9
32.6
42.4
Minor BPS
41.9
-0.7
2.1
48.61
43.9

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500