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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21265959_21266646_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21265959 - 21266646
Intron Length:
688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GGGTGCTGACGC
Flanking Amino Acid:
AGRAITGLYCGLSSGLVPMY
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
73.5
0.53
0.9
66.4
35.7
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
38.7
-0.8
2.2
44.37
43.4

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500