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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21266763_21266869_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21266763 - 21266869
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CCTATTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TCCTCTCAAACC
Flanking Amino Acid:
AIVTGILISQVLGLDFLLGN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
79.3
0.66
0.9
73.2
35.7
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
48.9
-0.1
2
62.26
43.8

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500