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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21267033_21267337_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21267033 - 21267337
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TTTTCCTTGTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
AATGGTTCATCT
Flanking Amino Acid:
KLGKVEEAKKSLKRLRGNCD
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
59.7
39.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
80
0.68
0.9
81.5
30.4
Minor 5ss
33.5
-1.9
3.1
39.3
40
Minor BPS
42.1
-0.5
2.1
59.34
44.2

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500