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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21267526_21267999_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21267526 - 21267999
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTC
5'SS Class:
major
3'SS Sequence:
TGTATTTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
TGTTACCTAACC
Flanking Amino Acid:
ISQQFSGINAIFYYSTNIFE
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.5
42.9
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
71.8
0.49
1
68.9
41.9
Minor 5ss
37.5
-1.4
3.2
51.7
45
Minor BPS
63.4
0.4
1.9
77.55
37.5

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500