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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21270140_21270299_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21270140 - 21270299
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
ACTTGACCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACTTGACC
Flanking Amino Acid:
IVGMCFQYIADLCGSYVFVI
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
67.1
0.38
0.9
59.2
36.6
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
64.8
0.45
1.5
72.61
38.4

Associated Gene:

Gene:
SLC2A2
Ensembl Gene ID:
ENSAPLG00000010156
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010622
21263992 - 21270491
6500