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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21277846_21278913_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21277846 - 21278913
Intron Length:
1068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTGATCTTATTT
Flanking Amino Acid:
SKTGKHGHAKVHLVGIDIFN
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
85.6
0.8
0.7
81.6
30.5
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
53.3
0.18
1.7
67.57
44

Associated Gene:

Gene:
EIF5A2
Ensembl Gene ID:
ENSAPLG00000025753
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031757
21277681 - 21281819
4139
ENSAPLT00000024142
21277681 - 21283119
5439
ENSAPLT00000043049
21277681 - 21281355
3675