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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21285422_21285782_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
21285422 - 21285782
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCGCTGTTG
5'SS Class:
weak_major
3'SS Sequence:
AGCAAAAGGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATTT
Flanking Amino Acid:
QLGLGLYTRQKKAKKATWKF
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.02
1.3
46.8
42
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
46.2
-0.2
1.1
32.2
39.4
Minor 5ss
25.3
-2.8
4.3
36.8
42.2
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
RPL22L1
Ensembl Gene ID:
ENSAPLG00000009626
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017618
21285351 - 21287375
2025