About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2133060_2133859_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2133060 - 2133859
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATCTTTAATT
Flanking Amino Acid:
NKQKQTTLPGPLKKGEKEKK
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.8
43.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
29.2
-2.4
2.5
25.2
36.6
Minor BPS
78.9
0.99
1.1
85.56
34.5

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034347
2102816 - 2147051
44236