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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2133060_2135022_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2133060 - 2135022
Intron Length:
1963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTTTAATTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTATCTTTAATT
Flanking Amino Acid:
SLLMIETKKPPLKKGEKEKK
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.7
0.69
0.8
78.9
33.2
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
78.9
0.99
1.1
85.56
34.5

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002428
2102816 - 2147051
44236