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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21334657_21337978_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21334657 - 21337978
Intron Length:
3322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTAAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTCCCTTAAGT
Flanking Amino Acid:
IIAAVASILSGVCYAEFGVR
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
72.2
39.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.8
0.69
0.9
78.3
34
Minor 5ss
32.6
-2
3.4
46.8
48.5
Minor BPS
79.1
0.99
1.5
93.68
34.1

Associated Gene:

Gene:
SLC7A14
Ensembl Gene ID:
ENSAPLG00000009288
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009665
21334264 - 21345107
10844