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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21338216_21338994_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21338216 - 21338994
Intron Length:
779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAACC
5'SS Class:
major
3'SS Sequence:
TTCTCTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTCTCTTACCC
Flanking Amino Acid:
ISSVGTLNGLGKGEESYPDL
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
68.6
36.5
Major BPS
69.2
0.48
1
61
37.1
Major PPT
79.3
0.66
0.8
73.1
36.3
Minor 5ss
28.9
-2.4
2.7
28.2
35.6
Minor BPS
68.7
0.57
1.6
79.35
35.8

Associated Gene:

Gene:
SLC7A14
Ensembl Gene ID:
ENSAPLG00000009288
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009665
21334264 - 21345107
10844