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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2133902_2135022_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2133902 - 2135022
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
ATTTATTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SLLMIETKKPTLPKNKQKQT
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77
0.61
1
73.7
40.9
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
U2SURP
Ensembl Gene ID:
ENSAPLG00000002348
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034347
2102816 - 2147051
44236