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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21339213_21341024_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21339213 - 21341024
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTTGCCCAACC
Flanking Amino Acid:
GQFLPFGWPGVLKGAATCFY
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
1
69.7
41.3
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.8
0.58
0.9
70.1
35.5
Minor 5ss
35
-1.7
2.8
37.9
39.5
Minor BPS
51.9
0.04
2.3
75.8
40.5

Associated Gene:

Gene:
SLC7A14
Ensembl Gene ID:
ENSAPLG00000009288
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009665
21334264 - 21345107
10844