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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21341566_21341984_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21341566 - 21341984
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCAC
5'SS Class:
major
3'SS Sequence:
TTTCGTGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCAATTTTAACC
Flanking Amino Acid:
YAMAGDGLLFRFLSHVSSYT
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1.3
72.3
39.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.4
0.64
0.9
69.5
41.6
Minor 5ss
29.9
-2.3
2.7
35.6
41
Minor BPS
59.1
0.26
1.3
60.05
39.1

Associated Gene:

Gene:
SLC7A14
Ensembl Gene ID:
ENSAPLG00000009288
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009665
21334264 - 21345107
10844