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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21342863_21344784_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21342863 - 21344784
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTTCCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CTCCCCTCCATC
Flanking Amino Acid:
WIRFAVWCFVGLLIYFGYGM
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
77.1
0.61
0.8
69.3
36.9
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
46.4
-0.3
2
55.52
43.3

Associated Gene:

Gene:
SLC7A14
Ensembl Gene ID:
ENSAPLG00000009288
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009665
21334264 - 21345107
10844