Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2135615_2136557_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2135615 - 2136557

Intron Length:

943

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGGTA

5'SS Class:

strong_major

3'SS Sequence:

ATCTGCTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTGAT

U12 Branch Point Sequence:

AATTGATTAACA

Flanking Amino Acid:

KKEQEELKKKEDEKAAAEIY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

34.9

Major BPS

79.8

0.74

0.9

69.4

37.7

Major PPT

72.6

0.51

0.8

66.5

Minor 5ss

32.9

-2

3.6

46.7

48.6

Minor BPS

58.7

0.27

72.55

38.8

Associated Gene:

Gene:

U2SURP

Ensembl Gene ID:

ENSAPLG00000002348

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034347

2102816 - 2147051

44236

ENSAPLT00000002428

2102816 - 2147051

44236