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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21356719_21359191_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21356719 - 21359191
Intron Length:
2473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GCCCCACCAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
ATAATCAAAATC
Flanking Amino Acid:
KPLVDILILPGYVQACRALM
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.8
34
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
58.4
0.19
0.9
50.9
31.6
Minor 5ss
36.2
-1.6
3.5
52.1
45.1
Minor BPS
45
-0.4
1.8
54.94
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011692
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012160
21350605 - 21359417
8813