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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21366955_21370125_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21366955 - 21370125
Intron Length:
3171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
KDKEAEYAAQLAELRQRLDH
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
SKIL
Ensembl Gene ID:
ENSAPLG00000009027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009412
21366609 - 21378050
11442