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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21371564_21371788_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21371564 - 21371788
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATC
Flanking Amino Acid:
KTSMEQHKCLDPPVSTHSAR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.4
0.73
0.7
77.4
30.2
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
66.4
0.5
1.6
73.85
37.7

Associated Gene:

Gene:
SKIL
Ensembl Gene ID:
ENSAPLG00000009027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009412
21366609 - 21378050
11442