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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21372028_21373427_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21372028 - 21373427
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTACTGTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATTCTTGATT
Flanking Amino Acid:
EPQPPSFFHPSYYLYMCDKV
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.6
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
0.9
72.5
37.4
Minor 5ss
37.5
-1.4
3.2
49
47.2
Minor BPS
70.9
0.74
1.1
78.8
37.9

Associated Gene:

Gene:
SKIL
Ensembl Gene ID:
ENSAPLG00000009027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009412
21366609 - 21378050
11442