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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21373526_21376413_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21373526 - 21376413
Intron Length:
2888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCGCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
EKNQKRTRSKVDSQQSLELP
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.1
0.66
0.8
77.7
31.2
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SKIL
Ensembl Gene ID:
ENSAPLG00000009027
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009412
21366609 - 21378050
11442