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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21386185_21386761_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21386185 - 21386761
Intron Length:
577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TTAATCTTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATCTTAATA
Flanking Amino Acid:
NEPVQLTPDDDDIVKKIDQS
Intron Amino Acid Position:
571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70.5
0.46
1
66.7
39.1
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
73
0.72
1.2
76.67
34.1

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038