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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21386878_21387182_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21386878 - 21387182
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
GTGTCACTAAAT
Flanking Amino Acid:
PFFRNVDWDLMEQKQVVPPF
Intron Amino Acid Position:
533

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72
32.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
75.7
0.58
0.8
74
35.3
Minor 5ss
38.2
-1.3
3.1
45.3
45.2
Minor BPS
49.6
0.05
2
72.59
43.3

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038