About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21387273_21388305_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21387273 - 21388305
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TGTTCTTGCACA
Flanking Amino Acid:
AGVLKSFLNKDPKERLGCHP
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
70
0.5
1
67
39.8
Major PPT
76.5
0.6
0.9
72
38
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
57.1
0.22
1.9
72.92
38.9

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038