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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21388386_21388487_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21388386 - 21388487
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
CTGATGTGAACC
Flanking Amino Acid:
DQNTEDYLFQVILEKQIRIP
Intron Amino Acid Position:
476

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.1
1.11
0.7
89.8
22.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
82.7
0.74
0.9
77.3
37
Minor 5ss
36
-1.6
2.6
43.5
43.6
Minor BPS
44.9
-0.4
2.1
55.11
43.2

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038