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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21390106_21390705_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21390106 - 21390705
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTATCT
Flanking Amino Acid:
RQRKLPEEHARFYSAEISLA
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
77.3
0.61
0.8
69.8
36.7
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
61.4
0.44
1.9
79.85
41.3

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038