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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21392885_21393318_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21392885 - 21393318
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TCTTTGTCAACA
Flanking Amino Acid:
SLDHVGEEKEAMGIRESGKA
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
77.5
0.62
0.9
73.4
35.9
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
52.7
0.08
2.2
70.77
41.8

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038