About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21394157_21395016_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21394157 - 21395016
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TGCTTAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATGTGCTTAATT
Flanking Amino Acid:
IECGRHTLQPEPIMPMDPSS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77
0.61
0.9
70.5
38.9
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
68.9
0.67
1.7
82.03
40

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038