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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21396599_21397744_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21396599 - 21397744
Intron Length:
1146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGGATA
Flanking Amino Acid:
RPGMPCPGEDKSIYRRGARR
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.2
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.6
85.6
21.5
Minor 5ss
37
-1.5
2.7
44.2
38.4
Minor BPS
53.5
0.1
1.7
71.64
33.9

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038