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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21397796_21398579_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21397796 - 21398579
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
GTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CAAAAATTAATA
Flanking Amino Acid:
LNKDSELLIHVFPCVPERPG
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
61
40
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.9
0.9
0.7
84.9
29.9
Minor 5ss
42.3
-0.8
3.1
52.5
46.6
Minor BPS
46.5
-0.2
1.8
52.79
38.6

Associated Gene:

Gene:
PRKCI
Ensembl Gene ID:
ENSAPLG00000008398
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008816
21385697 - 21407734
22038